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JavaGenes, NASA Ames. Written largely by Al Globus | |||||||||
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java.lang.Objectgov.nasa.javaGenes.forceFields.Potential
gov.nasa.javaGenes.forceFields.StillingerWeber
gov.nasa.javaGenes.forceFields.StillingerWeberSiF
gov.nasa.javaGenes.forceFields.StillingerWeberPartialSiF
Nested Class Summary |
Nested classes inherited from class gov.nasa.javaGenes.forceFields.StillingerWeber |
StillingerWeber.ChromosomeParametersData |
Field Summary |
Fields inherited from class gov.nasa.javaGenes.forceFields.StillingerWeberSiF |
energyUnitErgPerAtom, energyUnitKcalPerMol |
Fields inherited from class gov.nasa.javaGenes.forceFields.StillingerWeber |
a_index, A_index, a1_index, a2_index, alleles, alleleSetup, alpha_index, angleInterval, B_index, beta_index, bondLengthInterval, C_index, chromosome, cutoffInterval, cutoffs, delta_index, exponentInterval, factorInterval, flourineThreeBodyParametersIncrement, gamma_index, lambda_index, m_index, NotApplicable, numberOfThreeBodyParameters, numberOfTwoBodyParameters, p_index, q_index, setupComplete, specialThreeBodyParametersIncrement, theta0_index |
Fields inherited from class gov.nasa.javaGenes.forceFields.Potential |
STILLINGER_WEBER, TERSOFF |
Constructor Summary | |
StillingerWeberPartialSiF(java.lang.String[] multibodyNames,
DoubleInterval factorInterval,
DoubleInterval exponentInterval,
DoubleInterval cutoffInterval)
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Method Summary | |
void |
formSetup()
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Methods inherited from class gov.nasa.javaGenes.forceFields.StillingerWeberSiF |
addFFF, addThreeBody, addTwoBody, getEnergy, getEnergy, getForce, getLengthScale, need, setCutoff, setCutoff, setCutoff, setupChromosomeFromPaper |
Methods inherited from class gov.nasa.javaGenes.forceFields.StillingerWeber |
addSpecialThreeBody, addToArraySizes, calculateForce, calculateTwoBodyEnergy, canModel, cutoff, getAlleles, getChromosome, getChromosomeArraySizes, getCutoff, getCutoff, getCutoffTerm, getEnergy, getEnergy, getSpeciesIndex, getValue, hasThreeBody, hasTwoBody, lengthTerm, mustModel, mustModel, mustModel, need, noThreeTermParameters, setBondLengthInterval, setChromosome, setCutoff, setCutoffInterval, setExponentInterval, setFactorInterval, setIndices, setupAllelesAndChromosome, setupChromosomeFromPaper, setValue |
Methods inherited from class gov.nasa.javaGenes.forceFields.Potential |
getEnergy, getEnergy, toString |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public StillingerWeberPartialSiF(java.lang.String[] multibodyNames, DoubleInterval factorInterval, DoubleInterval exponentInterval, DoubleInterval cutoffInterval)
Method Detail |
public void formSetup()
formSetup
in class StillingerWeberSiF
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JavaGenes, NASA Ames. Written largely by Al Globus | |||||||||
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SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |