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JavaGenes, NASA Ames. Written largely by Al Globus | |||||||||
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java.lang.Objectgov.nasa.javaGenes.forceFields.Potential
gov.nasa.javaGenes.forceFields.StillingerWeber
gov.nasa.javaGenes.forceFields.StillingerWeberSi
Nested Class Summary |
Nested classes inherited from class gov.nasa.javaGenes.forceFields.StillingerWeber |
StillingerWeber.ChromosomeParametersData |
Field Summary |
Fields inherited from class gov.nasa.javaGenes.forceFields.StillingerWeber |
a_index, A_index, a1_index, a2_index, alleles, alleleSetup, alpha_index, angleInterval, B_index, beta_index, bondLengthInterval, C_index, chromosome, cutoffInterval, cutoffs, delta_index, exponentInterval, factorInterval, flourineThreeBodyParametersIncrement, gamma_index, lambda_index, m_index, NotApplicable, numberOfThreeBodyParameters, numberOfTwoBodyParameters, p_index, q_index, setupComplete, specialThreeBodyParametersIncrement, theta0_index |
Fields inherited from class gov.nasa.javaGenes.forceFields.Potential |
STILLINGER_WEBER, TERSOFF |
Constructor Summary | |
StillingerWeberSi()
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Method Summary | |
protected void |
formSetup()
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protected int[] |
getChromosomeArraySizes()
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protected void |
setupChromosomeFromPaper()
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Methods inherited from class gov.nasa.javaGenes.forceFields.StillingerWeber |
addSpecialThreeBody, addThreeBody, addToArraySizes, addTwoBody, calculateForce, calculateTwoBodyEnergy, canModel, cutoff, getAlleles, getChromosome, getCutoff, getCutoff, getCutoffTerm, getEnergy, getEnergy, getEnergy, getEnergy, getForce, getSpeciesIndex, getValue, hasThreeBody, hasTwoBody, lengthTerm, mustModel, mustModel, mustModel, need, noThreeTermParameters, setBondLengthInterval, setChromosome, setCutoff, setCutoff, setCutoff, setCutoff, setCutoffInterval, setExponentInterval, setFactorInterval, setIndices, setupAllelesAndChromosome, setValue |
Methods inherited from class gov.nasa.javaGenes.forceFields.Potential |
getEnergy, getEnergy, toString |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public StillingerWeberSi()
Method Detail |
protected int[] getChromosomeArraySizes()
getChromosomeArraySizes
in class StillingerWeber
protected void formSetup()
formSetup
in class StillingerWeber
protected void setupChromosomeFromPaper()
setupChromosomeFromPaper
in class StillingerWeber
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JavaGenes, NASA Ames. Written largely by Al Globus | |||||||||
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