JavaGenes, NASA Ames. Written largely by Al Globus

gov.nasa.javaGenes.chemistry
Class Purine

java.lang.Object
  extended bygov.nasa.javaGenes.core.Evolvable
      extended bygov.nasa.javaGenes.graph.Graph
          extended bygov.nasa.javaGenes.chemistry.Molecule
              extended bygov.nasa.javaGenes.chemistry.Purine
All Implemented Interfaces:
java.lang.Cloneable, java.io.Serializable

public class Purine
extends Molecule

See Also:
Serialized Form

Nested Class Summary
 
Nested classes inherited from class gov.nasa.javaGenes.graph.Graph
Graph.TrailKey
 
Field Summary
 
Fields inherited from class gov.nasa.javaGenes.chemistry.Molecule
dimerForcePropertyName, energyPropertyName, unitCellPropertyName
 
Fields inherited from class gov.nasa.javaGenes.graph.Graph
edges, nodeTypePairsShortestTrailCounts, vertices
 
Fields inherited from class gov.nasa.javaGenes.core.Evolvable
childMakersUsed
 
Constructor Summary
Purine()
           
 
Methods inherited from class gov.nasa.javaGenes.chemistry.Molecule
copy, getAllAtoms, getAtom, getAtom, getComment, getDimerForce, getEnergy, getNumberOfAtoms, getUnitCell, hasUnitCell, isLegal, makeBond, moveAtomsIntoUnitCell, randomizeAtomicPositions, randomizeAtomicPositionsBy, randomizeAtomicPositionsBy, randomizeAtomicPositionsBy, removeLastNAtoms, scaleBy, setComment, setCommentFromProperties, setDimerForce, setEnergy, setPropertiesFromComment, setUnitCell
 
Methods inherited from class gov.nasa.javaGenes.graph.Graph
add, add, add, canMate, changed, clone, deepCopyGraph, delete, distanceFrom, executeOnEdges, executeOnVertices, getConnectedSubgraph, getConnectionTable, getEdge, getEdgeIterator, getEdgesSize, getEquivalent, getEquivalent, getExtendedVertexTypesCounter, getNodeTypePairsShortestTrailCounts, getNumberOfCycles, getRandomEdge, getRandomEdge, getRandomVertex, getRandomVertex, getSize, getStringKey, getTrailBetween, getVertex, getVertexAndTrailIterator, getVertexIterator, getVerticesSize, hasVertexPairCloserThan, isConnected, numberVertices, numberVerticesReverse, remove, remove, removeLastNVertices, replaceEdge, replaceVertex, setAllMarks, setEdgeMarks, setVertexMarks, shallowClone, toString
 
Methods inherited from class gov.nasa.javaGenes.core.Evolvable
addChildMakers, copyForEvolution, getChildMakersUsed, getSmallest, prepareForEvaluator, stateSave
 
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

Purine

public Purine()

JavaGenes, NASA Ames. Written largely by Al Globus