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JavaGenes, NASA Ames. Written largely by Al Globus | |||||||||
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java.lang.Objectgov.nasa.javaGenes.core.FitnessFunction
gov.nasa.javaGenes.forceFields.ManyMoleculesEnergyFitness
gov.nasa.javaGenes.forceFields.MMEFreferenceRMS
gov.nasa.javaGenes.forceFields.MMEFreferenceTanimoto
Field Summary |
Fields inherited from class gov.nasa.javaGenes.forceFields.MMEFreferenceRMS |
energyRangeDivideBy, referenceEnergy, referenceEnergyUncertainty, targetReferenceEnergy |
Fields inherited from class gov.nasa.javaGenes.forceFields.ManyMoleculesEnergyFitness |
doPerAtomEnergies, energies, filename, molecules, originalEnergyInterval, potential, scaleTo |
Fields inherited from class gov.nasa.javaGenes.core.FitnessFunction |
name |
Constructor Summary | |
MMEFreferenceTanimoto(Potential p,
ManyMultiBodiesForOneEnergy m,
double inEnergyRangeDivideBy,
double referenceEnergy)
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MMEFreferenceTanimoto(Potential p,
ManyMultiBodiesForOneEnergy m,
double inEnergyRangeDivideBy,
double inReferenceEnergy,
double referenceEnergyLowerBound,
double referenceEnergyUpperBound,
boolean inDoPerAtomEnergies)
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Method Summary | |
protected double |
calculateDelta(double energy,
double target)
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Methods inherited from class gov.nasa.javaGenes.forceFields.MMEFreferenceRMS |
calculateDistance |
Methods inherited from class gov.nasa.javaGenes.forceFields.ManyMoleculesEnergyFitness |
add, addEnergy, addToEnergies, calculateEnergy, evaluateFitness, getEnergy, getEnergyInterval, getFilename, getMultiBodiesForOneEnergy, multiplyEnergiesBy, report, scaleEnergiesTo, setEnergy, setFilename, toString |
Methods inherited from class gov.nasa.javaGenes.core.FitnessFunction |
bestDouble, getFunction, getName, getNameArray, isNewFunction, makeFiles, numberOfObjectives, setName, worstDouble |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public MMEFreferenceTanimoto(Potential p, ManyMultiBodiesForOneEnergy m, double inEnergyRangeDivideBy, double inReferenceEnergy, double referenceEnergyLowerBound, double referenceEnergyUpperBound, boolean inDoPerAtomEnergies)
public MMEFreferenceTanimoto(Potential p, ManyMultiBodiesForOneEnergy m, double inEnergyRangeDivideBy, double referenceEnergy)
Method Detail |
protected double calculateDelta(double energy, double target)
calculateDelta
in class MMEFreferenceRMS
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JavaGenes, NASA Ames. Written largely by Al Globus | |||||||||
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