AbstractCheckpointable
AcceptEqualOrBetter
AcceptEqualOrBetterTest
AcceptImprovement
AcceptImprovementTest
AcceptableSecondBrokenEdge
AcceptableSecondVertex
Accepter
Accepter
AccepterTest
AccessWindow
AccessWindowTest
AccessWindowWeight
AccessWindowsList
AddDirectedEdge
AddDirectedVertex
AddEdge
AddVertex
AllTests
Allele
AlleleSetup
AlleleTemplate
AlleleTemplateTest
AlleleTest
AmericanWireGauge
AmericanWireGaugeTest
And
AntiTournament
AntiTournamentLocal
AntiTournamentLocalTest
AntiTournamentTest
AssumedParameters
AssumedParametersTest
Atom
Atom.ExtendedTypeKey
AtomTest
AtomicSpecies
AvailabilityTimeline
AvailabilityTimelineTest
AvailableNode
AvailableNodeTest
apsp
Benzene
Bodies
BodiesTest
Body
Bond
BottomSubBreeder
Breeder
Breeder
Breeder
Breeder
Breeder
BreederElitist
BreederSteadyState
BreederSteadyState2
BreederWithTeachers
Brick3d
Brick3dTest
Brick3dWithSegments
Brick3dWithSegmentsTest
BrokenEdge
BrokenGraph
CandidatePopulation
CandidateReporter
ChangeFunctionByGeneration
ChangeFunctionByGenerationTest
ChangingWeightsObject
ChangingWeightsObjectTest
Checkpointer
ChildMaker
ChildMaker
ChildMaker
ChildMakerChain
ChildMakerDownFractionComparatorTest
ChildMakerEvolvingProvider
ChildMakerEvolvingProvider2
ChildMakerEvolvingProvider2Test
ChildMakerEvolvingProviderTest
ChildMakerProvider
ChildMakerProviderRandom
ChildMakerProviderRandomMutations
ChildMakerProviderTest
ChildMakerProviderWeighted
ChildMakerRandomCreator
ChildMakerTest
ChooseForDeath
ChooseParents
Chromosome
ChromosomeArrayCrossover
ChromosomeCrossover
ChromosomeDistanceFitness
ChromosomeIndividual
ChromosomeIntervalCrossover
ChromosomeIntervalCrossoverTest
ChromosomeMutation
ChromosomeMutationTest
ChromosomeParameterValues
ChromosomeParameters
ChromosomePopulation
ChromosomeReporter
ChromosomeXoverWithMutation
ChromosomeXoverWithMutationTest
CircularIntQueue
ComparativeStatistics
ComparativeStatisticsTest
Compatible
Constants
Constants
CoreUtility
CoreUtilityTest
CrossTrackSlew
CrossTrackSlewTest
Crossover
CrossoverAdewaya
CrossoverAdewayaTest
CrossoverInterval
CrossoverIntervalTest
CrossoverOnePoint
CrossoverOnePointEach
CrossoverOnePointEachTest
CrossoverOnePointTest
CrossoverPickOne
CrossoverPickOneTest
CrossoverTest
CrossoverTwoPoints
CrossoverTwoPointsEach
CrossoverTwoPointsEachTest
CrossoverTwoPointsTest
CyclesSimilarity
compareTechniquesMain
DataTable
DeJongFitnessFunctions
DeJongFitnessFunctionsTest
Debug
Debug
Debug
DescendingWeightsComparator
DescendingWeightsComparatorTest
DirectedEdge
DirectedGraph
DirectedVertex
DissimilarEdgeCompatibleWithVertices
Distribution
DoubleInterval
DoubleIntervalTest
DoublesList
DoublesListTest
DutyCycleConstraint
DutyCycleConstraintTest
EOSModel
EOSModelTest
EOSschedulingEvolvable
EOSschedulingEvolvableTest
EOSschedulingIndividual
EOSschedulingParameters
EOSschedulingPopulation
EOSschedulingReporter
EarliestFirstPlacer
EarliestFirstPlacerTest
EarliestFromChosenWindowPlacer
EarliestFromRandomWindowPlacer
EasyFile
Edge
EdgeIterator
Element
Error
Evolvable
EvolvableDouble
EvolvableDoubleList
EvolvableDoubleListTest
EvolvableDoubleTest
EvolvableTest
ExperimentMain
ExtendedTreeSet
ExtendedTreeSetTest
ExtendedTypeSimilarity
ExtendedVector
ExtendedVectorTest
FieldRecordText
FieldRecordTextTest
FindMinimumInTsdFile
FirstClusterLowestEnergyFitnessFunction
FirstClusterLowestEnergyFitnessFunctionTest
Fitness
FitnessBad
FitnessDouble
FitnessFunction
FitnessFunctionBadSize
FitnessFunctionBadSizeTest
FitnessFunctionFixed
FitnessFunctionMultiObjective
FitnessFunctionMultiObjectiveToOne
FitnessFunctionRandom
FitnessFunctionWorstFitness
FitnessFunctionWorstFitnessManyTries
FitnessFunctionWorstFitnessManyTriesTest
FitnessFunctionWorstFitnessTest
FitnessMultiObjective
FitnessMultiObjectiveTest
ForceFitnessRMS
ForceFitnessRMSTest
ForceFitnessTanimoto
FunctionalForm
GetLengthsAndAngles
Graph
Graph.TrailKey
GraphElement
GraphGenerator
GraphIndividual
GraphLayout
GraphParameters
GraphPopulation
GraphTest
GrowOnlyArray
GrowOnlyArrayTest
HasInputEdgeFrom
HasOutputEdgesTo
Horizon
HorizonTest
IO
IOTest
Immigrant
ImmigrantTest
Immigrants
ImmigrantsTest
IncrementIterator
IndexIterator
Indices
IndicesTest
Individual
IntegerInterval
IntegerIntervalTest
IsEqual
IsInstanceOf
IsMarked
Iterator
integer
KeyCounter
KeyCounterTest
LatticeConstantEnergies
LogComparisons
LogComparisonsTest
LogFile
LowestToHighestEnergyFitness
LowestToHighestEnergyFitnessTest
LowestToHighestEnergyGradualFitness
LowestToHighestEnergyGradualFitnessTest
MMEFreferenceRMS
MMEFreferenceRMSTest
MMEFreferenceTanimoto
Main
Main
MakeDimer
MakeDimerPair
MakeSeeds
MakeSiFMolecules
MakeThreeBodyXyz
MakeTrimer
ManyMoleculesEnergyFitness
ManyMoleculesEnergyFitnessRatio
ManyMoleculesEnergyFitnessTanimotoDistance
ManyMultiBodiesForOneEnergy
ManySamples
Mark
MarkIsSet
MathUtility
MathUtilityTest
Matrix3d
MiddleSubBreeder
MinMaxes
MinMaxesTest
MinimizeSlewingFitness
Molecule
MoleculeIndividual
MoleculeLayout
MoleculeMain
MoleculeParameters
MoleculePopulation
MoleculeTest
MoleculeTwoVertexCrossover
Molecules
MultiBodiesForOneEnergy
MultiBodiesForOneEnergyTest
MultiBody
MultiStageFitnessFunction
MultiStageFitnessFunctionTest
MutateEdge
MutateVertex
Mutation3Parents
Mutation3parents
Mutation3parentsTest
MutationDelete
MutationDeleteTest
MutationFixedStdDev
MutationFixedStdDevTest
MutationInsert
MutationInsertTest
molFormat
NeighboringPairsSelector
Node
NodeArrayTest
NodeFactory
NodeTest
Not
NotFoundException
NumberOfTakeImagesFitness
ObjectCache
ObjectCacheTest
ObjectCompatible
ObjectEquals
OneBody
Or
OrderMutation
Parameters
Parameters
Parameters2tsd
ParametersAndLog2tsd
ParametersSerializationTest
ParsimonyFitness
PeriodicCheckpoints
PermutationChildMaker
PermutationEvolvable
PermutationIndividual
PermutationKCutMutation
PermutationKCutMutationTest
PermutationOrderMutation
PermutationOrderMutationTest
PermutationParameters
PermutationPopulation
PermutationPositionCrossover
PermutationPositionCrossoverTest
PermutationTestFitness
PhenotypeChanger
PhenotypeChangerDummy
Placer
PointingRequirement
PointingRequirementTest
Population
PopulationTest
PositionCrossover
Potential
PotentialEnergyFitness
PotentialEnergyTestCase
Predicate
PrintTabSeparatedData
Procedure
ProductFitnessFunction
ProductFitnessFunctionTest
PropertiesList
PropertiesListTest
Purine
PutPotentialEnergiesAndForces
Pyridine
Quat4d
RandomChild
RandomDistribution
RandomEvolvableDoubleListProducer
RandomEvolvableProducer
RandomGaussianDistribution
RandomNumber
RandomNumberTest
ReinitializableFloat
ReinitializableFloatTest
ReinitializableFloatWithFactor
ReinitializableFloatWithFactorTest
ReinitializableInt
ReinitializableIntTest
Reporter
RestartAfterNChildrenWithoutAcceptance
RestartAfterNChildrenWithoutAcceptanceTest
RestartAfterNChildrenWithoutImprovement
RestartAfterNChildrenWithoutImprovementTest
RestartEveryNChildren
RestartEveryNChildrenTest
RestartNever
RestartPolicy
RootMeanSquares
RootMeanSquaresTest
RouletteWheel
RouletteWheel
RouletteWheelChooseLowWeight
RouletteWheelChooseLowWeightTest
RouletteWheelTest
RouletteWheelTest
Run
Run
RunChromosome
RunMolecule
RunPermutation
randomizeManyMolecules
randomizeXYZ
runEOSscheduling
SSRNode
SSRNodeTest
SSRTimeline
SSRTimelineNone
SSRTimelineTest
STKAccessFile
STKAccessFileTest
Sample
SampleTest
Satellite
Saver
Scheduler
Scheduler
SchedulerTest
SchedulingData
SchedulingFitnessFunction
SecondBody
SelectAll
SelectAllTest
SelectByProbability
SelectByProbabilityTest
SelectChunk
SelectChunkTest
SelectFixedIndices
SelectFixedIndicesTest
SelectFixedNumber
SelectFixedNumberTest
SelectModulo
SelectModuloTest
SelectOne
SelectOneNeighboringPair
SelectOneNeighboringPairTest
SelectOneTest
SelectTwoNeighboringPairs
SelectTwoNeighboringPairsTest
Selector
Sensor
SensorTest
SensorType
SetMark
SlewMotor
SlewMotorNone
SlewMotorTest
SlewNode
SlewNone
SlewRequirement
SlewTimeline
SlewTimelineNone
SlewTimelineTest
Slewable
SmallSlewsFitness
Species
Species2IndexMap
SqueakyWheelPlacedTSM
SqueakyWheelPlacedTSMTest
SqueakyWheelShiftForward
SqueakyWheelShiftForwardTest
SqueakyWheelTournamentSwapMutation
SqueakyWheelTournamentSwapMutationTest
SteadyStateDiscreteBreeder
SteadyStateDiscreteBreederTest
StillingerWeber
StillingerWeberEnergies
StillingerWeberPartialSiF
StillingerWeberPrintEnergiesAndForces
StillingerWeberSi
StillingerWeberSiF
StillingerWeberSiFTest
StillingerWeberSiTest
StillingerWeberTest
StudentFitness
StudentFitnessFunction
StudentTeacherTest
SubBreeder
TakeImage
Tanimoto
Task
TaskAndAccessWindowGenerator
TaskAndAccessWindowGeneratorTest
TaskList
TaskPlacementData
TaskPriorityFitness
TaskTest
TaskWeight
TaskWeightTest
TeacherFitnessFunction
TeacherPopulation
Tersoff
TersoffTest
TestFitnessFunction1
ThirdBody
ThreeBody
ThreeBodyTest
TimeInterval
Timeline
TimelineTest
Timer
TokenizeInput
TokenizeOutput
TopSubBreeder
Tournament
TournamentLocal
TournamentLocalTest
TournamentTest
Trail
TwoBody
TwoBodyTest
TwoVertexGraphCrossover
UnitCell
UnitCellNone
UnitCellTest
UpdateAndPropagatable
UpdateAndPropagateList
Utility
UtilityTest
VRMLUtility
VecMathTest
Vector3d
Vector3dTest
VectorIterator
Vertex
VertexAcceptsEdge
VertexAcceptsInputEdge
VertexAcceptsOutputEdge
VertexAndEdgeProvider
VertexAndTrailIterator
VertexIterator
VertexPairsDistanceSimilarity
VertexTest
Weight
WeightList
WeightListTest
Weighted0to1
WeightedStatistics
WeightedStatisticsTest
WeightedSumFitness
WeightedSumFitnessTest
xyzFormat
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